PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015890079.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family Dof
Protein Properties Length: 241aa    MW: 24662.3 Da    PI: 8.1599
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015890079.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.91.1e-382484262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s
  XP_015890079.1 24 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 84
                    57889****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-282482IPR003851Zinc finger, Dof-type
PfamPF027012.1E-332682IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2642882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MPSDSGDQCR RPPKAHNPGA PPPEQEHLPC PRCDSTNTKF CYYNNYNFSQ PRHFCKSCRR  60
YWTHGGTLRD IPVGGGSRKN AKRSRTATSA GSVITTSSLS DHHHPLSSAP VLVPLATNQG  120
GSPLQFGGCG GGSGGGDMKA NVNALCSGTF TSLLNTQGPG FLALGGFGLG LGTGFEDMSF  180
GIGRGIWPFP GAGDGGAGNG GGGTAIGSSW QFENADGGGL VAGDFCSWPD LAISTPGNGL  240
K
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00593DAPTransfer from AT5G66940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015890079.11e-175PREDICTED: dof zinc finger protein DOF3.4
TrEMBLA0A0A7CB764e-90A0A0A7CB76_JATCU; DNA binding with one finger 2
STRINGPOPTR_0007s11790.13e-89(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.16e-55OBF binding protein 1